PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G205300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRAS
Protein Properties Length: 495aa    MW: 51828.4 Da    PI: 6.0697
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G205300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS278.52.1e-851154852374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         + lL+ecA avs g+l+ a+ +L +l ++asp++ +  +Rl+ayft+A+aarl++s+ ++++ l+p  ++      + aa+++f++vsP+ 
  Sevir.3G205300.1.p 115 IALLMECAVAVSVGNLADANGMLLELAQMASPYApSCGERLVAYFTKAMAARLMSSWVGICAPLAPPFAA------VHAAFRAFYNVSPLA 199
                         689*******************************8889***********************888666554......678899********* PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                         +f++l++Nq Ilea++g+  vHi+D+d+  G  lQW++Ll aLa+Rp+gpp lR+Tg+g     s+ +l+ tg++La +A++lgvpfef +
  Sevir.3G205300.1.p 200 RFAYLACNQGILEAFHGKCLVHIVDLDVVPGgaLQWLSLLPALAARPGGPPVLRVTGFGM----SASALHDTGNQLAGLASKLGVPFEFYA 286
                         ****************************988447**************************....9************************** PP

                GRAS 181 lvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse.........sFlerfl 258
                         ++ +  +d +  + +v +   gEalaV++    h l+d  ++       +++lv+ l+Pkv+++veqe    +++          Fl+rf+
  Sevir.3G205300.1.p 287 VARRPGDDADAAAAAVPSrrpGEALAVHWLR--HALYDAAGDDGA----TMRLVRWLEPKVLTLVEQERGApGDGgggagnergHFLDRFV 371
                         888889999888887755567********98..888855555555....*******************6664444566777778******* PP

                GRAS 259 ealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sd 347
                         +al++ysalfdsl a+ p+++   r+ vE+ +lgrei nv+a  g +r  r + ++ W+  l + GF  +  + +a+  a      ++ + 
  Sevir.3G205300.1.p 372 SALHHYSALFDSLGASRPADEdASRHLVEHGVLGREIGNVLAVGGPSRSGRDK-FGCWQTELARHGFLRAGGGGRAQLVAG----ACPaGL 457
                         *************88888877699***********************999987.**************9999998766665....555566 PP

                GRAS 348 gyrveeesgslv.lgWkdrpLvsvSaWr 374
                         gy+v ++++  v lgWk+ pL++vS W+
  Sevir.3G205300.1.p 458 GYTVADDQDGTVrLGWKGTPLYAVSTWT 485
                         7****88777666**************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.13788467IPR005202Transcription factor GRAS
PfamPF035147.1E-83115485IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MSTGRGSDMQ DSLSLMQFHD PYLYGGGAGG ANLPLSSHSF LPHHHDFVHA DDRCPGKDVP  60
EFVDQAAAEV SCEQELAVSK EVSEGGGDGA VEEQNNGAAT TAARGEEEAH GVRMIALLME  120
CAVAVSVGNL ADANGMLLEL AQMASPYAPS CGERLVAYFT KAMAARLMSS WVGICAPLAP  180
PFAAVHAAFR AFYNVSPLAR FAYLACNQGI LEAFHGKCLV HIVDLDVVPG GALQWLSLLP  240
ALAARPGGPP VLRVTGFGMS ASALHDTGNQ LAGLASKLGV PFEFYAVARR PGDDADAAAA  300
AVPSRRPGEA LAVHWLRHAL YDAAGDDGAT MRLVRWLEPK VLTLVEQERG APGDGGGGAG  360
NERGHFLDRF VSALHHYSAL FDSLGASRPA DEDASRHLVE HGVLGREIGN VLAVGGPSRS  420
GRDKFGCWQT ELARHGFLRA GGGGRAQLVA GACPAGLGYT VADDQDGTVR LGWKGTPLYA  480
VSTWTWCPSP HAQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-3115248440374GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269620.0KJ726962.1 Zea mays clone pUT3662 GRAS transcription factor (GRAS56) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963689.10.0PREDICTED: protein SCARECROW-like
TrEMBLK3Z5S20.0K3Z5S2_SETIT; Uncharacterized protein
STRINGSi021890m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138132528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.12e-81GRAS family protein